Recombination MLE with Proc NLIN: f2recomb.sas A simple example of obtaining likelihood
confidence intervals: simple_ci.sas Bootstrap mean and standard deviation: simple_boot.sas
Interval Mapping:
Barley Marker data: barley.dat Barley Trait data: barley.traits Create SAS data set raw data: barley.sas Updated: 08/21/03 at 03:52:18 PM
Barley data generated by QTL Cartographer: barley1.data Updated: 08/21/03 at 03:52:19 PM
Create SAS data set from QTL Cartographer: barley1.sas Updated: 08/21/03 at 03:52:19 PM
Least squares analysis program: DHnlin.sas Updated: 08/21/03 at 03:52:22 PM
Interval mapping program: DHml.sas Updated: 08/21/03 at 03:52:21 PM
Composite Interval Mapping
Sample data set:
Map data:
sample.map Updated: 10/08/02 at 02:58:10 PM
Cross data:
sample.cro Updated: 10/08/02 at 02:58:07 PM
SAS program:
sample.sas Updated: 10/08/02 at 11:55:36 AM
CIM analysis program:
CIM.sas Updated: 08/21/03 at 03:52:20 PM
IM analysis program:
IM.sas Updated: 12/04/02 at 01:25:04 PM
includes both the L&K and Perm. Thersholds
Random QTL effect
Daughter Design:
Daughter Design data:
sire.dat Updated: 10/29/02 at 12:12:10 PM
Mixed Analysis:
sire.sas Updated: 10/29/02 at 12:12:07 PM
General Pedigree:
Gametic Covariance Matrix:
Mcalc.sas Updated: 11/06/02 at 09:30:19 AM
QTL REML analysis:
Program:
QTLREML.sas Updated: 11/18/02 at 10:41:16 AM
Data file:
datafile1q Updated: 08/21/03 at 03:52:21 PM
Pedigree:
pedfile Updated: 11/18/02 at 10:41:09 AM
Marker data:
pdq.input1 Updated: 11/18/02 at 10:40:56 AM
Power and Sample Size determination
Backcross Power analysis
Power.sas Updated: 12/09/02 at 01:53:00 PM
Daughter Design Power analysis
Power_HS.sas Updated: 12/09/02 at 01:49:39 PM
