Recombination MLE with Proc NLIN: f2recomb.sas A simple example of obtaining likelihood
confidence intervals: simple_ci.sas Bootstrap mean and standard deviation: simple_boot.sas
Interval Mapping:
Barley Marker data: barley.dat Barley Trait data: barley.traits Create SAS data set raw data: barley.sas Updated: 07/26/12 at 07:19:32 PM
Barley data generated by QTL Cartographer: barley1.data Updated: 07/26/12 at 07:19:32 PM
Create SAS data set from QTL Cartographer: barley1.sas Updated: 07/26/12 at 07:19:32 PM
Least squares analysis program: DHnlin.sas [an error occurred while processing this directive]
Interval mapping program: DHml.sas [an error occurred while processing this directive]
Composite Interval Mapping
Sample data set:
Map data:
sample.map Updated: 07/26/12 at 07:19:34 PM
Cross data:
sample.cro Updated: 07/26/12 at 07:19:34 PM
SAS program:
sample.sas Updated: 07/26/12 at 07:19:34 PM
CIM analysis program:
CIM.sas [an error occurred while processing this directive]
IM analysis program:
IM.sas [an error occurred while processing this directive]
includes both the L&K and Perm. Thersholds
Random QTL effect
Daughter Design:
Daughter Design data:
sire.dat Updated: 07/26/12 at 07:19:34 PM
Mixed Analysis:
sire.sas Updated: 07/26/12 at 07:19:34 PM
General Pedigree:
Gametic Covariance Matrix:
Mcalc.sas [an error occurred while processing this directive]
QTL REML analysis:
Program:
QTLREML.sas [an error occurred while processing this directive]
Data file:
datafile1q Updated: 07/26/12 at 07:19:32 PM
Pedigree:
pedfile Updated: 07/26/12 at 07:19:34 PM
Marker data:
pdq.input1 Updated: 07/26/12 at 07:19:34 PM
Power and Sample Size determination
Backcross Power analysis
Power.sas [an error occurred while processing this directive]
Daughter Design Power analysis
Power_HS.sas [an error occurred while processing this directive]
