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Day #1

• Listserv_help
• Office location
• syllabus.pdf

Chapter 1

• Book - Section1.1.pdf; Section1.2.pdf
• Notes - Section1.1.docx; Section1.2.docx
• Homework - Section1.1_HW.docx, Section1.2_HW.docx, Reproduce examples within the notes
• Programs
  • beta.R
  • binomial.R
  • bird.R
  • bird_matched_pair.r (exercise in book)
  • CI_pi.R
  • conf_level_4_intervals.R
  • conf_level.R
  • conf_level_two_prob.R
  • conf_level_wald_only.R
  • hepC_prev.R
  • Salk.R
• Husker field goal video
• HIV vaccine clinical trial exercise - PBS Newshour from September 24, 2009: video, transcript, text story; PBS Newshour from October 20, 2009: text story; LA Times article from October 20, 2009

Chapter 2

• Book - Chater2.pdf
• Notes - Chapter2.docx
• Homework - Chapter2_HW.docx, Reproduce examples within the notes
• Programs and data
  • 4levels.r 
  • logistic.R
  • non-convergence.R
  • pi_plot.R
  • placekick.R
  • placekick_distance_sq.r
  • placekick.csv
  • sampling_dist.r
  • tomato_virus.r
  • tomato_virus.xls
• Bilder and Loughin (1998)
• Dallas Cowboys icing the kicker video

Chapter 3

• Book - Chapter3_2-3-12.pdf
• Notes - Chapter3.docx
• Homework - Chapter3_HW.docx, Reproduce examples within the notes
• Programs
  • alligator.txt
  • cumulative_logit_model_plot.r
  • fiber.r
  • fiber.xls
  • multinomial.R
  • wheat.R
  • wheat.xls

Chapter 4

• Book - Chapter4_3-10-12.pdf
• Notes - Chapter4.docx
• Homework - Chapter4_HW.docx, Reproduce examples within the notes
• Programs
  • AlcoholPoRegs.R
  • Beetle Egg Crowding.txt
  • BeetleEggCrowding.R
  • BeetleEggCrowdingZIP.R
  • bird_ch4.r
  • BirdCountPoReg.R
  • BirdCounts.xlsx
  • DeHart_simplified.csv
  • horseshoe.R
  • horseshoe.txt
  • LarryBirdPoReg.R
  • PoiConfLevels.R
  • Pol_ideol_data.csv
  • PolIdeolNominal.R
  • PolIdeolOrd.R
  • stoplight.r
  • stoplight.xls
  • ZIPSim.R

Chapter 5

• Book - None available
• Notes - Chapter5.docx
• Homework - Chapter5_HW.docx, Reproduce examples within the notes
• Programs
  • examine_model.R
  • horseshoe_all.txt
  • horseshoe_Ch5.R
  • placekick.BW.csv
  • placekick.mb.csv
  • placekick_Ch5.R
  • placekick_model_build.R
  • wheat_Ch5.R
• Referenced on page 5.12 of the notes

Chapter 6

• Book - Section6.3.pdf
• Notes
• Homework - Reproduce examples within the notes
• Programs

 

Appendix A

• Book - AppendixA_12-9-11.pdf
• Notes - R intro.doc
• Homework - Reproduce examples within the notes. If you have problems, please contact me for help! 
• Programs and data
  • gpa.R
  • gpa.txt
  • gpa.xls
  • gpa - original.csv (used in the version of notes and appendix available here)
  • gpa - original.txt (used in the version of notes and appendix available here)
  • gpa - original.xls (used in the version of notes and appendix available here)
  • R_appendix_initial_examples.R

Appendix B

• Book - AppendixB_12-19-11.pdf
• Notes - Because this appendix is not examined alone, notes for it are embeded within the notes of other sections.
• Programs
  • likelihood_function.r
  • LR Plots.R
  • Newton_Raphson.r
  • Poisson_Likelihood.R

Other book materials

• Table of contents as of 1-8-12 - TOC.pdf
• List of references as of 1-8-12 - References.pdf