Stat 892: Sequence Analysis
|
Examples
- Test for positional dependence:indep.sas
Updated: 08/19/08 at 08:46:08 AM - Signal Analysis:
- Data input: signal_data.sas
Updated: 08/19/08 at 08:46:12 AM - Weight Matrix: signal_weight.sas
Updated: 08/19/08 at 08:46:12 AM - First Order: signal_fo.sas
Updated: 08/19/08 at 08:46:12 AM - MDD: signal_mdd.sas
Updated: 09/15/08 at 08:04:52 AM - Catmod: signal_catmod.sas
Updated: 08/19/08 at 08:46:12 AM - Catmod Macro: signal_catmod2.sas
Updated: 08/19/08 at 08:46:12 AM
- Data input: signal_data.sas
- BLOSUM substitution matrix:blosum.sas
Updated: 08/19/08 at 08:46:06 AM - PAM substitution matrix:pam.sas
Updated: 08/19/08 at 08:46:10 AM - BLAST Random Walk:blast.sas
Updated: 08/19/08 at 08:46:05 AM - BLAST Hypotheses:miniblast.sas
Updated: 10/29/08 at 08:57:35 AM - BLAST Score calculation:blast-score.sas
Updated: 08/19/08 at 08:46:05 AM
Data Sets- BLOSUM62:BLOSUM62
Updated: 08/19/08 at 08:46:06 AM - BLOSUM62:BLOSUM62.fasta
Updated: 08/19/08 at 08:46:06 AM - Query Segment:query2.txt
Updated: 08/19/08 at 08:46:11 AM - Subject Segment:subj2.txt
Updated: 08/19/08 at 08:46:12 AM - Query Segment:query-9.5.fasta
Updated: 08/19/08 at 08:46:11 AM - Subject Segment:subj-9.5.fasta
Updated: 08/19/08 at 08:46:13 AM
- BLOSUM62:BLOSUM62
- Yi-Kuo Yu , and Stephen F. Altschul The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. Bioinformatics 21: 902-911.
- BLAST Statistics calculation:blast-calc.sas
Updated: 08/19/08 at 08:46:05 AM - BLAST Poisson calculation:blast-pois.sas
Updated: 08/19/08 at 08:46:05 AM - BLAST Sum Statistic calculation:sumint.sas
Updated: 08/19/08 at 08:46:13 AM - Markov chains:markov.sas
Updated: 08/19/08 at 08:46:10 AM
