Biom 896: Statistical Genomics

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Examples

SAS

• c², WLS, and LRT example: peas.sas
• Power example: peapow.sas
• Recombination
  MLE with Proc NLIN: f2recomb.sas
  A simple example of obtaining likelihood confidence intervals: simple_ci.sas
  Bootstrap mean and standard deviation: simple_boot.sas
• Calculate 3 locus log likelihoods: 3locus_like.sas
• Draw 10 bootstrap samples: boot.sas
• Interval Mapping:
  Barley Marker data: barley.dat
  Barley Trait data: barley.traits
  Create SAS data set: barley.sas
  Analysis program: qtl.sas